This post may contain affiliate links. Please read our disclosure policy.

Fall is all about baking cozy desserts, isn’t it? When temperature starts to
drop, it’s time to preheat the oven for pumpkin pies, muffins, and apple
tarts.

 Fall flavors like pumpkin, maple, apple, and cinnamon make these autumnal treats one of our favorites.
Today, I’m here with a new fall recipe that makes a perfect start for your
day. Featuring the delicious flavors of fall and a creamy cream cheese swirl,
these Pumpkin Cream Cheese Swirl Muffins are a must-try! Don’t forget to double the batch because these gems won’t last long!


A Feel Good Fall Dessert

Glorious pumpkin muffins topped with thick swirls of sweet cream cheese that melt right into the top as they bake.
You can’t go wrong with these Pumpkin Cream Cheese Swirl Muffins

I can’t tell you how happy I am that fall has arrived! The leaves are falling and crunching under my feet on the sidewalk, and the mountains are turning all kinds of gorgeous shades of red, yellow, and orange.

Aside from the beauty of autumn, I’m enjoying all of the pumpkin recipes I’ve been making recently: Pumpkin Spice Chocolate Oatmeal Cookies, No-Bake Pumpkin Spice Energy Bites, No-Bake Pumpkin Lasagna Dessert, Sheet Pan Pumpkin Pancakes, and Special Baked Pumpkin Spice Donuts, and I have another delectable recipe for you today: these Pumpkin Muffins with a Cheesecake Swirl!!


What Makes these Pumpkin Cheese Swirl Muffins Special?

It is hard to resist a muffin packed with pumpkin spice and a rich swirl of cream cheese. A tried and true recipe, I hope you enjoy it too as much
as I do!

Whether you’re a pumpkin fan or just looking for the best pumpkin muffins
ever, these Pumpkin Cream Cheese Muffins will not disappoint.

This muffin’s base is an extra moist pumpkin muffin made with the pumpkin
puree. When they are baked, we top them with a thick swirl of sweet cream
cheese that melts right into the top. It’s almost like a muffins that frosts
itself!
Moreover, these pumpkin muffins have few calories and
only take less than 30 minutes to bake! WAY lighter than muffins from coffee shops or bakeries.

Another thing to love about this recipe is that we use an entire can of pumpkin, so you’re not left with pumpkin puree leftovers.

And the best part? Your kids will love decorating and frosting their own pumpkin cream cheese muffins!


Ultra-moist and Decadent Muffins

Soft and moist pumpkin cream cheese swirl muffins with warm spices and cream cheese. They will make your house smell like autumn.
These Pumpkin Cream Cheese Muffins are going to make you fall in love from the first bite.

Pumpkin Cheese Swirl Muffins Ingredients

  • Flour: You will need all purpose flour.
  • Cream cheese : Adds a rich, creamy, and slightly tangy flavor to our muffins. Mascarpone cheese can also be used.
  • Pumpkin spice: Also known as “pumpkin pie spice,” can be found in the spice section of your local supermarket. Or follow my instructions below to make your own!
  • Pumpkin puree: Also known as “canned pumpkin,” this can usually be found in the baking aisle of your grocery store (be careful not to grab the pumpkin pie filling by mistake).
  • Brown sugar: Adds a deep, caramel-like flavor to our muffins. If you don’t have brown sugar, you can use coconut brown sugar.
  • Eggs: Eggs allow us to incorporate more air into our muffins, resulting in a light and fluffy texture. Make sure your eggs are sitting at room temperature.
  • Baking Soda: Baking soda is the leavening agent that will make your muffins rise beautifully.
  • Honey: You will need honey for the muffin batter and the cream cheese filling. if you don’t have honey, you can use granulated sugar or maple syrup.
  • Oil: You can use vegetable oil, coconut oil, or avocado oil.
  • Salt: Add a dash of salt to balance the flavors.

A Delicious Pumpkin Treat

soft and moist pumpkin cream cheese swirl muffins that will make your house smell like autumn.
Welcome fall season with the perfect dessert!

Frequently Asked Questions (FAQs):

Can you make mini pumpkin cream cheese muffins?

Sure! They will bake for 12-14 minutes at 350°F. This recipe makes 12 large muffins, which means you’ll have a lot more mini muffins.

What’s the difference between pumpkin puree and pumpkin pie filling?

Pumpkin puree is cooked pumpkin that has been blended or mashed to a smooth consistency. There should be no additional seasoning, spice, flavoring, or sugar. On the other hand, pumpkin pie filling contains spices and flavoring and is sweeter.

How to store these pumpkin muffins?

Because of the cream cheese swirl, it’s best to store any leftover muffins in
the refrigerator. They can be frozen, but in my opinion, fresh foodstuff taste best.
Place the leftovers in plastic bags and freeze for up to three months. Before eating, allow them to defrost to room temperature.


A Crowd Pleaser!

You won't be able to resist these moist pumpkin muffins loaded with pumpkin flavor and creamy cream cheese.
You won’t be able to resist these moist pumpkin muffins!

Variations and Substitutions

  • Dairy-free: Use plant-based cream cheese.
  • Vegan: Replace the eggs with 2 flax eggs (to make a flax egg, combine tablespoon ground flax seed with 3 tablespoons water). Add a few tablespoons of water Allow it to sit for 10-15 minutes until it becomes gelatinous.) Also, use plant-based cream cheese.
  • Gluten-free: To make gluten-free, use all-purpose gluten-free flour (1:1 ratio).
  • Chocolatey: Add some chocolate chips to make your own chocolate chip pumpkin muffins.

Top Tips

  • Use canned pumpkin (often labeled pure pumpkin puree) for this recipe, which contains only pumpkin. Pumpkin pie filling is a different ingredient that includes sweetener and spices.
  • Storage: Store your pumpkin cheesecake muffins in an airtight container in the refrigerator for up to 5 days.
  • Freezing: To freeze, wrap each completely cooled muffin in foil and place in a freezer bag. Muffins can be frozen for up to three months.
  • Make your own homemade pumpkin spice if you don’t have any on hand!
  • These muffins can be made sugar free by substituting honey for sugar free maple syrup and brown sugar for a sugar free form.

Steps to Prep Pumpkin Cream Cheese Swirl Muffins

First, preheat the oven at 350°F. In a large bowl combine the dry ingredients, white flour, pumpkin spice, baking soda and salt.  

Next, add the wet ingredients, honey, brown sugar, pumpkin purée, eggs, coconut oil, and vanilla extract to the flour mixture.  Mix until very well combined.

Then, In a medium bowl mix together the softened room temperature cream cheese, honey and vanilla extract. 

After that, Scoop about 1/4 cup batter into oil sprayed cupcake liners or muffin tin.  I used large cupcake liners which made 8 big cupcakes but this recipe will make about 16 regular sized cup cakes.  

Cupcake liners filled with the Pumpkin Cream Cheese Swirl Muffin batter

Now, heat the softened cream cheese mixture for 15 seconds in the microwave, then scoop in the center of each pumpkin batter about 1/2 tablespoon of cream cheese mixture. Using a toothpick, gently swirl around the top of each muffin.

Pumpkin Cream Cheese Swirl Muffins with a decadent cream cheese swirls

Finally, place the muffin tin in the preheated oven and bake muffins for 18-20 minutes. Enjoy!


Other Fall Recipes You Must Try:


4.92 from 12 votes

Pumpkin Cream Cheese Swirl Muffins

By: Lama
These soft and moist Pumpkin Cream Cheese Swirl Muffins will make your house smell like autumn. They are ready in 30 minutes and won't last long, so make sure to double the batch!
Prep Time: 10 minutes
Cook Time: 20 minutes
Total Time: 28 minutes
Servings: 16 cupcakes

Ingredients 

BATTER

  • 1 3/4 cups all-purpose flour
  • 1 tablespoon pumpkin pie spice
  • 1 teaspoon baking soda
  • ½ teaspoon salt
  • 1 cup honey
  • 1 cup packed brown sugar , or coconut sugar
  • 1 (15 oz) pumpkin puree
  • 2 eggs, large
  • ½ cup coconut oil, or vegetable oil, or avocado oil
  • 1 tablespoon vanilla extract

Cream Cheese Frosting

  • 8 oz cream cheese
  • 1 tablespoon honey, or granulated sugar
  • ½ tablespoon vanilla extract

Instructions 

  • Preheat the oven at 350°F. In a bowl combine the dry ingredients, white flour, pumpkin spice, baking soda and salt.  
  • Then add the wet ingredients, honey, brown sugar, pumpkin purée, eggs, coconut oil, and vanilla extract.  Mix until very well combined.
  • In a small bowl mix together the softened room temperature cream cheese, honey and vanilla extract. 
  • Scoop about 1/4 cup batter into oil sprayed cupcake liners.  I used large cupcake liners which made 8 big cupcakes but this recipe will make about 16 regular sized cup cakes.  
  • Now heat the softened cream cheese mixture for 15 seconds in the microwave then scoop in the center of each cupcake batter about 1/2 tablespoon cream cheese frosting.  Using a toothpick, gently swirl around.
  • Bake for 18-20 minutes.

Notes

Helpful Tips:
  • Use canned pumpkin (often labeled “100% pure pumpkin”) for this recipe, which contains only pumpkin. Pumpkin pie filling is a different ingredient that includes sweetener and spices.
  • Storage: Store your muffins in an airtight container in the refrigerator for up to 5 days.
  • Freezing: To freeze, wrap each completely cooled muffin in foil and place in a freezer bag. Muffins can be frozen for up to three months.
  • Make your own homemade pumpkin pie spice if you don’t have any on hand!

Nutrition

Calories: 274kcal | Carbohydrates: 41g | Protein: 3g | Fat: 12g | Saturated Fat: 9g | Polyunsaturated Fat: 0.5g | Monounsaturated Fat: 2g | Trans Fat: 0.002g | Cholesterol: 35mg | Sodium: 198mg | Potassium: 71mg | Fiber: 0.3g | Sugar: 33g | Vitamin A: 376IU | Vitamin C: 0.2mg | Calcium: 32mg | Iron: 1mg
Like this recipe? Rate and comment below!

About Lama

I'm Lama, welcome to my blog where you will find simple and diverse recipes your entire family will enjoy. I am honored to connect with you through the recipes I prepare!

You May Also Like:

Leave a comment

Your email address will not be published. Required fields are marked *

Recipe Rating




16 Comments

  1. 5 stars
    Absolutely delicious! I made them this morning and they were so moist and the cream cheese topping was such a delicious surprise. Can’t wait to see how they are after freezing!

  2. 4 stars
    Way too sweet!! I didn’t have nearly enough brown sugar and only used 1/4c and went ahead with the full cup of honey. It’s still too sweet! But they are delicious, and turned out perfectly – didn’t stick to the muffin tin with a fantastic cream cheese swirl. Topped them with homemade cranberry sauce to take the sweetness down a notch. Thanks for the recipe, I’ll keep it!

    1. Thank you for the feedback Tanja! You can definitely add less sugar next time. We love them just the way they are but I understand some people aren’t used to too sweetness. Happy Holidays!

  3. Can almond flour or coconut flour be substituted for all purpose flour in the pumpkin cream cheese muffins?

    1. Wanda, this is how I make it… with honey. In my opinion it makes it healthier to use honey vs sugar if I could. You can go ahead and make it with sugar.

  4. Hi! I’m embarrassed to say how long I have had this recipe saved and even bought the liners! (A year 🤭) Getting the ingredients to make them this weekend. I noticed in one of the prep pictures it looks like oats are in the batter but none are in the ingredient list. Curious, if I wanted to mix things up with this recipe, how could I includes oats? So excited to try this and will let you know how they turn out! 😋 Irene

    1. Hi Irene! You are going to love this recipe! There are no oats in this recipe at all! The photo you mentioned has been removed. Depending on your oven power, the muffins may need a little more time baking in the oven.